David Murrugarra
David Murrugarra
Associate Professor, University of Kentucky
Подтвержден адрес электронной почты в домене uky.edu - Главная страница
Название
Процитировано
Процитировано
Год
A mathematical framework for agent based models of complex biological networks
F Hinkelmann, D Murrugarra, AS Jarrah, R Laubenbacher
Bulletin of mathematical biology 73 (7), 1583-1602, 2011
952011
Modeling stochasticity and variability in gene regulatory networks
D Murrugarra, A Veliz-Cuba, B Aguilar, S Arat, R Laubenbacher
EURASIP Journal on Bioinformatics and Systems Biology 2012 (1), 1-11, 2012
712012
Boolean nested canalizing functions: A comprehensive analysis
Y Li, JO Adeyeye, D Murrugarra, B Aguilar, R Laubenbacher
Theoretical Computer Science 481, 24-36, 2013
502013
Identification of control targets in Boolean molecular network models via computational algebra
D Murrugarra, A Veliz-Cuba, B Aguilar, R Laubenbacher
BMC systems biology 10 (1), 1-11, 2016
392016
Regulatory patterns in molecular interaction networks
D Murrugarra, R Laubenbacher
Journal of theoretical biology 288, 66-72, 2011
332011
The number of multistate nested canalyzing functions
D Murrugarra, R Laubenbacher
Physica D: Nonlinear Phenomena 241 (10), 929-938, 2012
292012
Bifurcations in Boolean networks
CJ Kuhlman, HS Mortveit, D Murrugarra, VS Kumar
arXiv preprint arXiv:1108.2974, 2011
192011
Molecular network control through boolean canalization
D Murrugarra, ES Dimitrova
EURASIP Journal on Bioinformatics and Systems Biology 2015 (1), 1-8, 2015
172015
The spruce budworm and forest: a qualitative comparison of ODE and Boolean models
R Robeva, D Murrugarra
Letters in Biomathematics 3 (1), 1, 2016
112016
Stabilizing gene regulatory networks through feedforward loops
C Kadelka, D Murrugarra, R Laubenbacher
Chaos: An Interdisciplinary Journal of Nonlinear Science 23 (2), 025107, 2013
102013
Conditioning and robustness of RNA Boltzmann sampling under thermodynamic parameter perturbations
E Rogers, D Murrugarra, C Heitsch
Biophysical journal 113 (2), 321-329, 2017
92017
Algebraic models and their use in systems biology
R Laubenbacher, F Hinkelmann, D Murrugarra, A Veliz-Cuba
Discrete and Topological Models in Molecular Biology, 443-474, 2014
82014
Evolution of cellular differentiation: from hypotheses to models
P Márquez-Zacarías, RM Pineau, M Gomez, A Veliz-Cuba, D Murrugarra, ...
Trends in Ecology & Evolution 36 (1), 49-60, 2021
72021
Transcriptional correlates of proximal-distal identify and regeneration timing in axolotl limbs
SR Voss, D Murrugarra, TB Jensen, JR Monaghan
Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology …, 2018
72018
The Number of canalyzing functions over any finite set
Y Li, D Murrugarra, JO Adeyeye, R Laubenbacher
Scientific Research Publishing, 2013
62013
Estimating propensity parameters using google pagerank and genetic algorithms
D Murrugarra, J Miller, AN Mueller
Frontiers in neuroscience 10, 513, 2016
52016
Improving RNA secondary structure prediction via state inference with deep recurrent neural networks
D Willmott, D Murrugarra, Q Ye
Computational and Mathematical Biophysics 8 (1), 36-50, 2020
32020
Control of intracellular molecular networks using algebraic methods
LS Vieira, RC Laubenbacher, D Murrugarra
Bulletin of mathematical biology 82 (1), 1-22, 2020
32020
Multi-state canalyzing functions over finite fields
Y Li, D Murrugarra, JO Adeyeye, R Laubenbacher
arXiv preprint arXiv:1110.6481, 2011
32011
Structure and Dynamics of Polynomial Dynamical Systems
R Laubenbacher, D Murrugarra, A Veliz-Cuba
arXiv preprint arXiv:1108.0209, 2011
32011
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