| QUBIC: a qualitative biclustering algorithm for analyses of gene expression data G Li, Q Ma, H Tang, AH Paterson, Y Xu Nucleic acids research 37 (15), e101-e101, 2009 | 252 | 2009 |
| DOOR 2.0: presenting operons and their functions through dynamic and integrated views X Mao, Q Ma, C Zhou, X Chen, H Zhang, J Yang, F Mao, W Lai, Y Xu Nucleic acids research 42 (D1), D654-D659, 2014 | 162 | 2014 |
| Caldicellulosiruptor core and pan genomes reveal determinants for non-cellulosomal thermophilic deconstruction of plant biomass SE Blumer-Schuette, RJ Giannone, JV Zurawski, I Ozdemir, Q Ma, Y Yin, ... Journal of Bacteriology, 2012 | 112 | 2012 |
| Protein–protein interaction sites prediction by ensemble random forests with synthetic minority oversampling technique X Wang, B Yu, A Ma, C Chen, B Liu, Q Ma Bioinformatics, 2019 | 64 | 2019 |
| LightGBM-PPI: Predicting protein-protein interactions through LightGBM with multi-information fusion C Chen, Q Zhang, Q Ma, B Yu chemometrics and intelligent laboratory systems 191, 54-64, 2019 | 62 | 2019 |
| The understanding of circular RNAs as special triggers in carcinogenesis Z Xin, Q Ma, S Ren, G Wang, F Li Briefings in functional genomics 16 (2), 80-86, 2017 | 61 | 2017 |
| Comprehensive characterization of the genomic alterations in human gastric cancer J Cui, Y Yin, Q Ma, G Wang, V Olman, Y Zhang, WC Chou, CS Hong, ... International journal of cancer 137 (1), 86-95, 2015 | 61 | 2015 |
| Predicting drug-target interactions using Lasso with random forest based on evolutionary information and chemical structure H Shi, S Liu, J Chen, X Li, Q Ma, B Yu Genomics 111 (6), 1839-1852, 2019 | 54 | 2019 |
| SubMito-XGBoost: predicting protein submitochondrial localization by fusing multiple feature information and eXtreme gradient boosting B Yu, W Qiu, C Chen, A Ma, J Jiang, H Zhou, Q Ma Bioinformatics 36 (4), 1074-1081, 2020 | 51 | 2020 |
| Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis S Wang, Y Yin, Q Ma, X Tang, D Hao, Y Xu BMC Plant Biology 12 (1), 138, 2012 | 50 | 2012 |
| QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data Y Zhang, J Xie, J Yang, A Fennell, C Zhang, Q Ma Bioinformatics 33 (3), 450-452, 2017 | 48 | 2017 |
| LncFinder: an integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property S Han, Y Liang, Q Ma, Y Xu, Y Zhang, W Du, C Wang, Y Li Briefings in bioinformatics 20 (6), 2009-2027, 2019 | 47 | 2019 |
| DMINDA 2.0: integrated and systematic views of regulatory DNA motif identification and analyses J Yang, X Chen, A McDermaid, Q Ma Bioinformatics 33 (16), 2586-2588, 2017 | 47 | 2017 |
| Interpretation of differential gene expression results of RNA-seq data: review and integration A McDermaid, B Monier, J Zhao, B Liu, Q Ma Briefings in bioinformatics 20 (6), 2044-2054, 2019 | 43* | 2019 |
| UbiSitePred: A novel method for improving the accuracy of ubiquitination sites prediction by using LASSO to select the optimal Chou's pseudo components X Cui, Z Yu, B Yu, M Wang, B Tian, Q Ma Chemometrics and Intelligent Laboratory Systems 184, 28-43, 2019 | 41 | 2019 |
| Predicting protein–protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach B Tian, X Wu, C Chen, W Qiu, Q Ma, B Yu Journal of Theoretical Biology 462, 329-346, 2019 | 40 | 2019 |
| DMINDA: an integrated web server for DNA motif identification and analyses Q Ma, H Zhang, X Mao, C Zhou, B Liu, X Chen, Y Xu Nucleic acids research 42 (W1), W12-W19, 2014 | 40 | 2014 |
| Integrative methods and practical challenges for single-cell multi-omics A Ma, A McDermaid, J Xu, Y Chang, Q Ma Trends in Biotechnology, 2020 | 39 | 2020 |
| Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress CM Wilson, S Yang, M Rodriguez, Q Ma, CM Johnson, L Dice, Y Xu, ... Biotechnology for biofuels 6 (1), 1-13, 2013 | 39 | 2013 |
| A new framework for identifying cis-regulatory motifs in prokaryotes G Li, B Liu, Q Ma, Y Xu Nucleic acids research 39 (7), e42-e42, 2011 | 38 | 2011 |
Ying XuProfessor of Biochemistry and Molecular Biology, University of GeorgiaVerified email at uga.edu
