| Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ... Science Advances, eabc5801, 2020 | 1169 | 2020 |
| Trajectory-based differential expression analysis for single-cell sequencing data K Van den Berge, H Roux de Bézieux, K Street, W Saelens, R Cannoodt, ... Nature communications 11 (1), 1201, 2020 | 440 | 2020 |
| A multimodal cell census and atlas of the mammalian primary motor cortex Principal manuscript editors, Analysis coordination, ... Nature 598 (7879), 86-102, 2021 | 261 | 2021 |
| A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ... Nature 598 (7879), 103-110, 2021 | 236* | 2021 |
| Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ... Genome Biology 19 (24), 250126, 2018 | 203 | 2018 |
| RNA sequencing data: hitchhiker's guide to expression analysis K Van Den Berge, KM Hembach, C Soneson, S Tiberi, L Clement, ... Annual Review of Biomedical Data Science 2, 2019 | 136 | 2019 |
| stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage K Van den Berge, C Soneson, MD Robinson, L Clement Genome biology 18 (1), 151, 2017 | 99 | 2017 |
| A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta S Moeys, J Frenkel, C Lembke, JTF Gillard, V Devos, K Van den Berge, ... Scientific Reports 6 (1), 19252, 2016 | 75 | 2016 |
| Hierarchical community detection by recursive partitioning T Li, L Lei, S Bhattacharyya, K Van den Berge, P Sarkar, PJ Bickel, ... Journal of the American Statistical Association 117 (538), 951-968, 2022 | 71 | 2022 |
| Distinctive growth and transcriptional changes of the diatom Seminavis robusta in response to quorum sensing related compounds F Stock, G Bilcke, S De Decker, CM Osuna-Cruz, K Van den Berge, ... Frontiers in Microbiology 11, 511653, 2020 | 25 | 2020 |
| Strain-specific transcriptional responses overshadow salinity effects in a marine diatom sampled along the Baltic Sea salinity cline E Pinseel, T Nakov, K Van den Berge, KM Downey, KJ Judy, ... The ISME Journal 16 (7), 1776-1787, 2022 | 22 | 2022 |
| A multimodal cell census and atlas of the mammalian primary motor cortex BRAIN Initiative Cell Census Network (BICCN), RS Adkins, AI Aldridge, ... Biorxiv, 2020.10. 19.343129, 2020 | 22 | 2020 |
| Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta G Bilcke, K Van den Berge, S De Decker, E Bonneure, N Poulsen, ... The ISME Journal 15 (2), 562-576, 2021 | 21 | 2021 |
| satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications J Gilis, K Vitting-Seerup, K Van den Berge, L Clement F1000Research 10, 2021 | 20 | 2021 |
| Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression HR de Bézieux, K Van den Berge, K Street, S Dudoit BioRxiv, 2021.03. 09.433671, 2021 | 13 | 2021 |
| A guide to trajectory inference and RNA velocity P Weiler, K Van den Berge, K Street, S Tiberi Single Cell Transcriptomics: Methods and Protocols, 269-292, 2022 | 12 | 2022 |
| Effect of management and age of ploughed out grass–clover on forage maize yield and residual soil nitrogen M Cougnon, K Van Den Berge, T D'Hose, L Clement, D Reheul The Journal of Agricultural Science 156 (6), 748-757, 2018 | 8 | 2018 |
| Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects K Van den Berge, HJ Chou, HR de Bézieux, K Street, D Risso, J Ngai, ... Cell Reports Methods 2 (11), 2022 | 7 | 2022 |
| Altering the Sex Pheromone Cyclo(l-Pro-l-Pro) of the Diatom Seminavis robusta towards a Chemical Probe E Bonneure, A De Baets, S De Decker, K Van den Berge, L Clement, ... International Journal of Molecular Sciences 22 (3), 1037, 2021 | 7 | 2021 |
| Neurogenomic Profiling Reveals Distinct Gene Expression Profiles Between Brain Parts That Are Consistent in Ophthalmotilapia Cichlids S Derycke, L Kéver, K Herten, K Van den Berge, M Van Steenberge, ... Frontiers in Neuroscience 12, 136, 2018 | 7 | 2018 |
Lieven ClementAssociate Professor in Statistical Genomics, Ghent UniversityVerified email at ugent.be
