Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature OV Tsodikov, MT Record, Jr, YV Sergeev Journal of Computational. Chemistry 23, 600-609, 2002 | 457 | 2002 |
New insights into fluoroquinolone resistance in Mycobacterium tuberculosis: functional genetic analysis of gyrA and gyrB mutations S Malik, M Willby, D Sikes, OV Tsodikov, JE Posey PloS one 7 (6), e39754, 2012 | 223 | 2012 |
Structural basis for the recruitment of ERCC1‐XPF to nucleotide excision repair complexes by XPA OV Tsodikov, D Ivanov, B Orelli, L Staresincic, I Shoshani, R Oberman, ... The EMBO journal 26 (22), 4768-4776, 2007 | 207 | 2007 |
Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF–ERCC1 OV Tsodikov, JH Enzlin, OD Schärer, T Ellenberger Proceedings of the National Academy of Sciences 102 (32), 11236-11241, 2005 | 200 | 2005 |
A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA JM Pascal, OV Tsodikov, GL Hura, W Song, EA Cotner, S Classen, ... Molecular cell 24 (2), 279-291, 2006 | 169 | 2006 |
The XPA-binding domain of ERCC1 Is Required for Nucleotide Excision Repair but Not Other DNA Repair Pathways 2 B Orelli, TB McClendon, OV Tsodikov, T Ellenberger, LJ Niedernhofer, ... Journal of Biological Chemistry 285 (6), 3705-3712, 2010 | 150 | 2010 |
Unusual regioversatility of acetyltransferase Eis, a cause of drug resistance in XDR-TB W Chen, T Biswas, VR Porter, OV Tsodikov, S Garneau-Tsodikova Proceedings of the National Academy of Sciences 108 (24), 9804-9808, 2011 | 149 | 2011 |
DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and … ML Craig, OV Tsodikov, KL McQuade, PE Schlax Jr, MW Capp, ... Journal of molecular biology 283 (4), 741-756, 1998 | 147 | 1998 |
Kinetic studies and structural models of the association of E. coli σ70 RNA polymerase with the λPR promoter: large scale conformational changes in forming the kinetically … RM Saecker, OV Tsodikov, KL McQuade, PE Schlax Jr, MW Capp, ... Journal of molecular biology 319 (3), 649-671, 2002 | 146 | 2002 |
Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site DE Frank, RM Saecker, JP Bond, MW Capp, OV Tsodikov, SE Melcher, ... Journal of molecular biology 267 (5), 1186-1206, 1997 | 146 | 1997 |
Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding JA Holbrook, OV Tsodikov, RM Saecker, MT Record Jr Journal of molecular biology 310 (2), 379-401, 2001 | 141 | 2001 |
Domain-swapped dimerization of the HIV-1 capsid C-terminal domain D Ivanov, OV Tsodikov, J Kasanov, T Ellenberger, G Wagner, T Collins Proceedings of the National Academy of Sciences 104 (11), 4353-4358, 2007 | 122 | 2007 |
Data publication with the structural biology data grid supports live analysis PA Meyer, S Socias, J Key, E Ransey, EC Tjon, A Buschiazzo, M Lei, ... Nature communications 7 (1), 10882, 2016 | 106 | 2016 |
Quantitative analysis of the kinetics of end-dependent disassembly of RecA filaments from ssDNA TA Arenson, OV Tsodikov, MM Cox Journal of molecular biology 288 (3), 391-401, 1999 | 93 | 1999 |
A nonradioactive high-throughput assay for screening and characterization of adenylation domains for nonribosomal peptide combinatorial biosynthesis TJ McQuade, AD Shallop, A Sheoran, JE DelProposto, OV Tsodikov, ... Analytical biochemistry 386 (2), 244-250, 2009 | 90 | 2009 |
Analytic binding isotherms describing competitive interactions of a protein ligand with specific and nonspecific sites on the same DNA oligomer OV Tsodikov, JA Holbrook, IA Shkel, MT Record Biophysical journal 81 (4), 1960-1969, 2001 | 87 | 2001 |
Organized unidirectional waves of ATP hydrolysis within a RecA filament JM Cox, OV Tsodikov, MM Cox PLoS biology 3 (2), e52, 2005 | 86 | 2005 |
Alkylated piperazines and piperazine-azole hybrids as antifungal agents N Thamban Chandrika, SK Shrestha, HX Ngo, OV Tsodikov, KC Howard, ... Journal of Medicinal Chemistry 61 (1), 158-173, 2018 | 82 | 2018 |
Survival in nuclear waste, extreme resistance, and potential applications gleaned from the genome sequence of Kineococcus radiotolerans SRS30216 CE Bagwell, S Bhat, GM Hawkins, BW Smith, T Biswas, TR Hoover, ... PloS one 3 (12), e3878, 2008 | 82 | 2008 |
Quantifying additive interactions of the osmolyte proline with individual functional groups of proteins: comparisons with urea and glycine betaine, interpretation of m-values RC Diehl, EJ Guinn, MW Capp, OV Tsodikov, MT Record Jr Biochemistry 52 (35), 5997-6010, 2013 | 73 | 2013 |