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J. Christian J. Ray
J. Christian J. Ray
Computational Biologist at Exosome Diagnostics / Bio-Techne
Подтвержден адрес электронной почты в домене bio-techne.com
Название
Процитировано
Процитировано
Год
A methodology for performing global uncertainty and sensitivity analysis in systems biology
S Marino, IB Hogue, CJ Ray, DE Kirschner
Journal of theoretical biology 254 (1), 178-196, 2008
25542008
Synergy between individual TNF-dependent functions determines granuloma performance for controlling Mycobacterium tuberculosis infection
JCJ Ray, JAL Flynn, DE Kirschner
The Journal of Immunology 182 (6), 3706-3717, 2009
1752009
Stress‐response balance drives the evolution of a network module and its host genome
C González, JCJ Ray, M Manhart, RM Adams, D Nevozhay, AV Morozov, ...
Molecular systems biology 11 (8), 827, 2015
982015
Bistable responses in bacterial genetic networks: designs and dynamical consequences
A Tiwari, JCJ Ray, J Narula, OA Igoshin
Mathematical biosciences 231 (1), 76-89, 2011
812011
Adaptive Evolution of the Lactose Utilization Network in Experimentally Evolved Populations of Escherichia coli
S Quan, JCJ Ray, Z Kwota, T Duong, G Balázsi, TF Cooper, RD Monds
PLoS genetics 8 (1), e1002444, 2012
722012
Adaptable functionality of transcriptional feedback in bacterial two-component systems
JCJ Ray, OA Igoshin
PLoS Comput Biol 6 (2), e1000676-e1000676, 2010
672010
Non-transcriptional regulatory processes shape transcriptional network dynamics
JCJ Ray, JJ Tabor, OA Igoshin
Nature Reviews Microbiology 9 (11), 817-828, 2011
582011
The timing of TNF and IFN-γ signaling affects macrophage activation strategies during Mycobacterium tuberculosis infection
JCJ Ray, J Wang, J Chan, DE Kirschner
Journal of theoretical biology 252 (1), 24-38, 2008
582008
Cellular growth arrest and persistence from enzyme saturation
JCJ Ray, ML Wickersheim, AP Jalihal, YO Adeshina, TF Cooper, ...
PLoS Computational Biology 12 (3), e1004825, 2016
382016
A novel metric reveals previously unrecognized distortion in dimensionality reduction of scRNA-Seq data
SM Cooley, T Hamilton, SD Aragones, JCJ Ray, EJ Deeds
Biorxiv, 689851, 2019
372019
Interplay of gene expression noise and ultrasensitive dynamics affects bacterial operon organization
JCJ Ray, OA Igoshin
Public Library of Science 8 (8), e1002672, 2012
292012
The effect of phospholipids and mucin on bacterial internalization in an enterocyte cell culture model
N Usui, C Ray, H Okuyama, RA Drongowski, AG Coran, CM Harmon
Ped Surg Int 15, 150-154, 1999
231999
Amino acid positions subject to multiple co‐evolutionary constraints can be robustly identified by their eigenvector network centrality scores
DJ Parente, JCJ Ray, L Swint‐Kruse
Proteins: Structure, Function, and Bioinformatics, 2015
222015
Requirement for multiple activation signals by anti-inflammatory feedback in macrophages
JCJ Ray, DE Kirschner
Journal of theoretical biology 241 (2), 276-294, 2006
152006
Diversity in lac Operon Regulation among Diverse Escherichia coli Isolates Depends on the Broader Genetic Background but Is Not Explained by Genetic …
KN Phillips, S Widmann, HY Lai, J Nguyen, JCJ Ray, G Balázsi, ...
Mbio 10 (6), 10.1128/mbio. 02232-19, 2019
122019
Lineage space and the propensity of bacterial cells to undergo growth transitions
A Bandyopadhyay, H Wang, JCJ Ray
PLOS Computational Biology 14 (8), e1006380, 2018
62018
Computation by natural systems
D Chu, M Prokopenko, JCJ Ray
Interface Focus 8 (6), 20180058, 2018
42018
Survival of phenotypic information during cellular growth transitions
JCJ Ray
ACS Synthetic Biology 5 (8), 810-816, 2016
42016
A framework for evaluating edited cell libraries created by massively parallel genome engineering
S Cawley, E Abbate, CG Abraham, S Alvarez, M Barber, S Bolte, J Bruand, ...
bioRxiv, 2021.09. 23.458228, 2021
22021
Signatures of antibiotic tolerance and persistence in response to divergent stresses
H Wang, GW McElfresh, N Wijesuriya, A Podgorny, AD Hecht, JCJ Ray
bioRxiv, 2023.02. 05.527212, 2023
2023
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Статьи 1–20