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Rajat Kumar Pal
Rajat Kumar Pal
Investigator in Computational Chemistry, Roivant Sciences; Brooklyn College and the Graduate Center
Подтвержден адрес электронной почты в домене gradcenter.cuny.edu
Название
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Процитировано
Год
Synthesis and biological assessment of 3, 7-dihydroxytropolones
DR Hirsch, DV Schiavone, AJ Berkowitz, LA Morrison, T Masaoka, ...
Organic & biomolecular chemistry 16 (1), 62-69, 2018
312018
Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry
T Dixon, D MacPherson, B Mostofian, T Dauzhenka, S Lotz, D McGee, ...
Nature communications 13 (1), 5884, 2022
302022
Perturbation potentials to overcome order/disorder transitions in alchemical binding free energy calculations
RK Pal, E Gallicchio
The Journal of Chemical Physics 151 (12), 2019
302019
Relative binding free energy calculations for ligands with diverse scaffolds with the alchemical transfer method
S Azimi, S Khuttan, JZ Wu, RK Pal, E Gallicchio
Journal of Chemical Information and Modeling 62 (2), 309-323, 2022
262022
A combined treatment of hydration and dynamical effects for the modeling of host–guest binding thermodynamics: the SAMPL5 blinded challenge
RK Pal, K Haider, D Kaur, W Flynn, J Xia, RM Levy, T Taran, L Wickstrom, ...
Journal of computer-aided molecular design 31, 29-44, 2017
232017
New dopamine D3-selective receptor ligands containing a 6-Methoxy-1, 2, 3, 4-tetrahydroisoquinolin-7-ol motif
S Gadhiya, P Cordone, RK Pal, E Gallicchio, L Wickstrom, T Kurtzman, ...
ACS Medicinal Chemistry Letters 9 (10), 990-995, 2018
162018
Synthetic α-hydroxytropolones as inhibitors of HIV reverse transcriptase ribonuclease H activity
RP Murelli, MP D'Erasmo, DR Hirsch, C Meck, T Masaoka, JA Wilson, ...
MedChemComm 7 (9), 1783-1788, 2016
142016
Atomic-resolution prediction of degrader-mediated ternary complex structures by combining molecular simulations with hydrogen deuterium exchange
T Dixon, D MacPherson, B Mostofian, T Dauzhenka, S Lotz, D McGee, ...
Biorxiv, 2021.09. 26.461830, 2021
122021
Inclusion of enclosed hydration effects in the binding free energy estimation of dopamine D3 receptor complexes
RK Pal, S Gadhiya, S Ramsey, P Cordone, L Wickstrom, WW Harding, ...
PLoS ONE 14 (9), e0222902, 2019
102019
New tetrahydroisoquinoline-based D3R ligands with an o-xylenyl linker motif
P Cordone, HK Namballa, B Muniz, RK Pal, E Gallicchio, WW Harding
Bioorganic & medicinal chemistry letters 42, 128047, 2021
22021
Erratum to: A combined treatment of hydration and dynamical effects for the modeling of host-guest binding thermodynamics: the SAMPL5 blinded challenge
RK Pal, K Haider, D Kaur, W Flynn, J Xia, RM Levy, T Taran, L Wickstrom, ...
Journal of computer-aided molecular design 31 (1), 45, 2017
12017
Advanced Computational Methodologies to Study Binding Free Energies of Biomolecular Complexes
RK Pal
City University of New York, 2020
2020
Non-equilibrium alchemical molecular dynamics simulations of protein-ligand binding
RK Pal, E Gallicchio
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 257, 2019
2019
Design, synthesis and biological evaluation of D3 antagonists with an aryl linker motif
P Cordone, B Muniz, E Gallicchio, RK Pal, T Kurtzman, WW Harding
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 256, 2018
2018
Computational methodologies for studying the binding affinities of protein-ligand complexes by combining hydration and dynamical effects
RK Pal, S Ramsey, P Cordone, L Wickstrom, T Kurtzman, WW Harding, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 256, 2018
2018
Making a splash in implicit solvent: Application of inhomogeneous solvation theory and continuum solvation to protein-ligand affinity predictions
L Wickstrom, R Pal, S Ramsey, T Kurtzman, E Gallicchio
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017
2017
Making a splash in implicit solvent: Application of inhomogeneous solvation theory and continuum solvation to host-guest binding affinity predictions
L Wickstrom, R Pal, K Haider, J Xia, W Flynn, T Kurtzman, R Levy, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 252, 2016
2016
Alchemical computational methodologies for the estimation of binding free energies of supramolecular complexes
RK Pal, L Wickstrom, E Gallicchio
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 252, 2016
2016
Large scale studies of molecular binding processes on computational grids and heterogeneous hardware resources
E Gallicchio, B Zhang, D Kilburg, RK Pal, H Tancredi, J Xia, WF Flynn, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
Studying the dissociation of Amyloid Forming region in Yeast adhesin
RK Pal
2015
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Статьи 1–20