| PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples C Hong, S Manimaran, Y Shen, JF Perez-Rogers, AL Byrd, ... Microbiome 2, 1-15, 2014 | 210 | 2014 |
| Myeloid-derived suppressor cell subsets drive glioblastoma growth in a sex-specific manner D Bayik, Y Zhou, C Park, C Hong, D Vail, DJ Silver, A Lauko, G Roversi, ... Cancer discovery 10 (8), 1210-1225, 2020 | 155 | 2020 |
| Pathoscope: species identification and strain attribution with unassembled sequencing data OE Francis, M Bendall, S Manimaran, C Hong, NL Clement, ... Genome research 23 (10), 1721-1729, 2013 | 151 | 2013 |
| Co-clustering phenome–genome for phenotype classification and disease gene discovery TH Hwang, G Atluri, MQ Xie, S Dey, C Hong, V Kumar, R Kuang Nucleic acids research 40 (19), e146-e146, 2012 | 88 | 2012 |
| DNA methylation regulates alternative polyadenylation via CTCF and the cohesin complex V Nanavaty, EW Abrash, C Hong, S Park, EE Fink, Z Li, TJ Sweet, ... Molecular cell 78 (4), 752-764. e6, 2020 | 76 | 2020 |
| Decitabine-and 5-azacytidine resistance emerges from adaptive responses of the pyrimidine metabolism network X Gu, R Tohme, B Tomlinson, N Sakre, M Hasipek, L Durkin, C Schuerger, ... Leukemia 35 (4), 1023-1036, 2021 | 68 | 2021 |
| Development and validation of a prognostic and predictive 32-gene signature for gastric cancer JH Cheong, SC Wang, S Park, MR Porembka, AL Christie, H Kim, HS Kim, ... Nature communications 13 (1), 774, 2022 | 56 | 2022 |
| Experiences in building an object-based storage system based on the OSD T-10 standard D Du, D He, C Hong, J Jeong, V Kher, Y Kim, Y Lu, A Raghuveer, ... Proceedings of MSST 6, 2006 | 44 | 2006 |
| Genome-wide profiling of the C. elegans dsRNAome JM Whipple, OA Youssef, PJ Aruscavage, DA Nix, C Hong, WE Johnson, ... Rna 21 (5), 786-800, 2015 | 43 | 2015 |
| Sequential single-cell transcriptional and protein marker profiling reveals TIGIT as a marker of CD19 CAR-T cell dysfunction in patients with non-Hodgkin lymphoma Z Jackson, C Hong, R Schauner, B Dropulic, PF Caimi, M de Lima, ... Cancer discovery 12 (8), 1886-1903, 2022 | 38 | 2022 |
| Hispanic/Latino Patients with Gastric Adenocarcinoma Have Distinct Molecular Profiles Including a High Rate of Germline CDH1 Variants SC Wang, Y Yeu, STG Hammer, S Xiao, M Zhu, C Hong, JR Clemenceau, ... Cancer research 80 (11), 2114-2124, 2020 | 27 | 2020 |
| Multi-omics reveals microbiome, host gene expression, and immune landscape in gastric carcinogenesis CH Park, C Hong, A Lee, J Sung, TH Hwang Iscience 25 (3), 2022 | 18 | 2022 |
| Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum H Cai, C Hong, J Gu, TG Lilburn, R Kuang, Y Wang BMC systems biology 6, 1-13, 2012 | 15 | 2012 |
| Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data C Hong, NL Clement, S Clement, SS Hammoud, DT Carrell, BR Cairns, ... BMC bioinformatics 14, 1-8, 2013 | 14 | 2013 |
| ACTA2 Expression Predicts Survival and Is Associated with Response to Immune Checkpoint Inhibitors in Gastric Cancer S Park, JD Karalis, C Hong, JR Clemenceau, MR Porembka, IH Kim, ... Clinical Cancer Research 29 (6), 1077-1085, 2023 | 13 | 2023 |
| Radiomics Features of 18F-Fluorodeoxyglucose Positron-Emission Tomography as a Novel Prognostic Signature in Colorectal Cancer J Kang, JH Lee, HS Lee, ES Cho, EJ Park, SH Baik, KY Lee, C Park, ... Cancers 13 (3), 392, 2021 | 13 | 2021 |
| Myeloid-derived suppressor cell subsets drive glioblastoma growth in a sex-specific manner. Cancer Discov. 2020; 10: 1210–1225. doi: 10.1158/2159-8290 D Bayik, Y Zhou, C Park, C Hong, D Vail, DJ Silver, A Lauko, G Roversi, ... CD-19-1355.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0 | 13 | |
| PathoQC: computationally efficient read preprocessing and quality control for high-throughput sequencing data sets C Hong, S Manimaran, WE Johnson Cancer Informatics 13, CIN. S13890, 2014 | 12 | 2014 |
| Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments H Cai, TG Lilburn, C Hong, J Gu, R Kuang, Y Wang BMC systems biology 9, 1-11, 2015 | 9 | 2015 |
| Heuristic reusable dynamic programming: Efficient updates of local sequence alignment C Hong, AH Tewfik IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (4), 570-582, 2009 | 9 | 2009 |
