Bingqiang Liu
Bingqiang Liu
School of Mathematics, Shandong University, PRC
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BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data
J Liu, G Li, Z Chang, T Yu, B Liu, R McMullen, P Chen, X Huang
PLoS computational biology 12 (2), e1004772, 2016
Protein–protein interaction sites prediction by ensemble random forests with synthetic minority oversampling technique
X Wang, B Yu, A Ma, C Chen, B Liu, Q Ma
Bioinformatics 35 (14), 2395-2402, 2019
Neighbor sum distinguishing total colorings of planar graphs
H Li, L Ding, B Liu, G Wang
Journal of Combinatorial Optimization 30 (3), 675-688, 2015
Neighbor sum distinguishing total colorings of K 4-minor free graphs
H Li, B Liu, G Wang
Frontiers of Mathematics in China 8 (6), 1351-1366, 2013
Goldindec: a novel algorithm for Raman spectrum baseline correction
J Liu, J Sun, X Huang, G Li, B Liu
Applied spectroscopy 69 (7), 834-842, 2015
Interpretation of differential gene expression results of RNA-seq data: review and integration
A McDermaid, B Monier, J Zhao, B Liu, Q Ma
Briefings in bioinformatics 20 (6), 2044-2054, 2019
DMINDA: an integrated web server for DNA motif identification and analyses
Q Ma, H Zhang, X Mao, C Zhou, B Liu, X Chen, Y Xu
Nucleic acids research 42 (W1), W12-W19, 2014
A new framework for identifying cis-regulatory motifs in prokaryotes
G Li, B Liu, Q Ma, Y Xu
Nucleic acids research 39 (7), e42-e42, 2011
An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale
Q Ma, B Liu, C Zhou, Y Yin, G Li, Y Xu
Bioinformatics 29 (18), 2261-2268, 2013
An algorithmic perspective of de novo cis-regulatory motif finding based on ChIP-seq data
B Liu, J Yang, Y Li, A McDermaid, Q Ma
Briefings in bioinformatics 19 (5), 1069-1081, 2018
Revisiting operons: an analysis of the landscape of transcriptional units in E. coli
X Mao, Q Ma, B Liu, X Chen, H Zhang, Y Xu
Bmc Bioinformatics 16 (1), 1-9, 2015
Bacterial regulon modeling and prediction based on systematic cis regulatory motif analyses
B Liu, C Zhou, G Li, H Zhang, E Zeng, Q Liu, Q Ma
Scientific reports 6 (1), 1-11, 2016
The two-component system RsrS-RsrR regulates the tetrathionate intermediate pathway for thiosulfate oxidation in Acidithiobacillus caldus
ZB Wang, YQ Li, JQ Lin, X Pang, XM Liu, BQ Liu, R Wang, CJ Zhang, ...
Frontiers in microbiology 7, 1755, 2016
QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data
J Xie, A Ma, Y Zhang, B Liu, S Cao, C Wang, J Xu, C Zhang, Q Ma
Bioinformatics 36 (4), 1143-1149, 2020
An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes
B Liu, H Zhang, C Zhou, G Li, A Fennell, G Wang, Y Kang, Q Liu, Q Ma
BMC genomics 17 (1), 1-12, 2016
Global O-GlcNAc levels modulate transcription of the adipocyte secretome during chronic insulin resistance
EE Wollaston-Hayden, R Harris, B Liu, R Bridger, Y Xu, L Wells
Frontiers in endocrinology 5, 223, 2015
Accurate recognition of cis -regulatory motifs with the correct lengths in prokaryotic genomes
G Li, B Liu, Y Xu
Nucleic acids research 38 (2), e12-e12, 2010
Network analyses in microbiome based on high-throughput multi-omics data
Z Liu, A Ma, E Mathé, M Merling, Q Ma, B Liu
Briefings in bioinformatics 22 (2), 1639-1655, 2021
Prediction of regulatory motifs from human Chip-sequencing data using a deep learning framework
J Yang, A Ma, AD Hoppe, C Wang, Y Li, C Zhang, Y Wang, B Liu, Q Ma
Nucleic acids research 47 (15), 7809-7824, 2019
Computational prediction of sigma-54 promoters in bacterial genomes by integrating motif finding and machine learning strategies
B Liu, L Han, X Liu, J Wu, Q Ma
IEEE/ACM transactions on computational biology and bioinformatics 16 (4 …, 2018
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