| Globaltest and GOEAST: two different approaches for Gene Ontology analysis I Hulsegge, A Kommadath, MA Smits BMC proceedings 3, 1-5, 2009 | 143 | 2009 |
| Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection JE Koltes, E Fritz-Waters, CJ Eisley, I Choi, H Bao, A Kommadath, ... BMC genomics 16, 1-13, 2015 | 106 | 2015 |
| Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding A Kommadath, H Bao, AS Arantes, GS Plastow, CK Tuggle, SMD Bearson, ... BMC genomics 15, 1-15, 2014 | 75 | 2014 |
| Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples I Choi, H Bao, A Kommadath, A Hosseini, X Sun, Y Meng, P Stothard, ... BMC genomics 15 (1), 1-10, 2014 | 48 | 2014 |
| Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection … H Bao, A Kommadath, G Liang, X Sun, AS Arantes, CK Tuggle, ... Scientific reports 5 (1), 12620, 2015 | 42 | 2015 |
| Methods for interpreting lists of affected genes obtained in a DNA microarray experiment J Hedegaard, C Arce, S Bicciato, A Bonnet, B Buitenhuis, ... BMC proceedings 3, 1-7, 2009 | 38 | 2009 |
| Mining for single nucleotide polymorphisms in pig genome sequence data HHD Kerstens, S Kollers, A Kommadath, M Del Rosario, B Dibbits, ... BMC genomics 10, 1-9, 2009 | 37 | 2009 |
| Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection A Kommadath, H Bao, I Choi, JM Reecy, JE Koltes, E Fritz-Waters, ... Scientific reports 7 (1), 46203, 2017 | 32 | 2017 |
| Development of a novel mule deer genomic assembly and species-diagnostic SNP panel for assessing introgression in mule deer, white-tailed deer, and their interspecific hybrids T Russell, C Cullingham, A Kommadath, P Stothard, A Herbst, D Coltman G3: Genes, Genomes, Genetics 9 (3), 911-919, 2019 | 30 | 2019 |
| Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species H Bao, A Kommadath, X Sun, Y Meng, AS Arantes, GS Plastow, LL Guan, ... BMC genomics 14, 1-10, 2013 | 30 | 2013 |
| Gene expression patterns in four brain areas associate with quantitative measure of estrous behavior in dairy cows A Kommadath, H Woelders, B Beerda, HA Mulder, AAC de Wit, ... BMC genomics 12, 1-10, 2011 | 30 | 2011 |
| Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes … M Schroyen, C Eisley, JE Koltes, E Fritz-Waters, I Choi, GS Plastow, ... BMC genomics 17, 1-16, 2016 | 27 | 2016 |
| Central genomic regulation of the expression of oestrous behaviour in dairy cows: a review H Woelders, T Van der Lende, A Kommadath, MFW Te Pas, MA Smits, ... Animal 8 (5), 754-764, 2014 | 26 | 2014 |
| A large interactive visual database of copy number variants discovered in taurine cattle A Kommadath, JR Grant, K Krivushin, AM Butty, CF Baes, TR Carthy, ... Gigascience 8 (6), giz073, 2019 | 24 | 2019 |
| MicroRNA Buffering and Altered Variance of Gene Expression in Response to Salmonella Infection H Bao, A Kommadath, GS Plastow, CK Tuggle, LL Guan, P Stothard PloS one 9 (4), e94352, 2014 | 23 | 2014 |
| Gene coexpression network analysis identifies genes and biological processes shared among anterior pituitary and brain areas that affect estrous behavior in dairy cows A Kommadath, MFW te Pas, MA Smits Journal of dairy science 96 (4), 2583-2595, 2013 | 21 | 2013 |
| Gene expression patterns in anterior pituitary associated with quantitative measure of oestrous behaviour in dairy cows A Kommadath, HA Mulder, AAC De Wit, H Woelders, MA Smits, B Beerda, ... Animal 4 (8), 1297-1307, 2010 | 20 | 2010 |
| Characterization of whole blood transcriptome and early-life fecal microbiota in high and low responder pigs before, and after vaccination for Mycoplasma hyopneumoniae PM Munyaka, A Kommadath, J Fouhse, J Wilkinson, N Diether, P Stothard, ... Vaccine 37 (13), 1743-1755, 2019 | 18 | 2019 |
| High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data AM Butty, TCS Chud, F Miglior, FS Schenkel, A Kommadath, K Krivushin, ... Scientific reports 10 (1), 8044, 2020 | 17 | 2020 |
| Differences in whole blood gene expression associated with infection time-course and extent of fetal mortality in a reproductive model of type 2 porcine reproductive and … JM Wilkinson, A Ladinig, H Bao, A Kommadath, P Stothard, JK Lunney, ... PLoS One 11 (4), e0153615, 2016 | 16 | 2016 |
