| Restoration of patterned vision with an engineered photoactivatable G protein-coupled receptor MH Berry, A Holt, J Levitz, J Broichhagen, BM Gaub, M Visel, C Stanley, ... Nature communications 8 (1), 1862, 2017 | 80 | 2017 |
| A sandbox for prediction and integration of DNA, RNA, and proteins in single cells MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ... Thirty-fifth Conference on Neural Information Processing Systems Datasets …, 2021 | 66 | 2021 |
| A matter of time: Using dynamics and theory to uncover mechanisms of transcriptional bursting NC Lammers, YJ Kim, J Zhao, HG Garcia Current opinion in cell biology 67, 147-157, 2020 | 42 | 2020 |
| Real-time single-cell characterization of the eukaryotic transcription cycle reveals correlations between RNA initiation, elongation, and cleavage J Liu, D Hansen, E Eck, YJ Kim, M Turner, S Alamos, HG Garcia PLoS computational Biology, 2021 | 30 | 2021 |
| Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing J Liu, V Tran, VNP Vemuri, A Byrne, M Borja, YJ Kim, S Agarwal, R Wang, ... Life Science Alliance 6 (1), 2023 | 29 | 2023 |
| Zebrahub–multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors M Lange, A Granados, S VijayKumar, J Bragantini, S Ancheta, ... bioRxiv, 2023.03. 06.531398, 2023 | 24 | 2023 |
| Lighting up the central dogma for predictive developmental biology HG Garcia, A Berrocal, YJ Kim, G Martini, J Zhao Current topics in developmental biology 137, 1-35, 2020 | 20 | 2020 |
| Predictive modeling reveals that higher-order cooperativity drives transcriptional repression in a synthetic developmental enhancer YJ Kim, K Rhee, J Liu, S Jeammet, MA Turner, SJ Small, HG Garcia Elife 11, e73395, 2022 | 11 | 2022 |
| CZ CELLxGENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data CZI Single-Cell Biology, S Abdulla, B Aevermann, P Assis, S Badajoz, ... bioRxiv, 2023.10. 30.563174, 2023 | 8 | 2023 |
| Single-cell and spatial multi-omics identify innate and stromal modules targeted by anti-integrin therapy in ulcerative colitis. E Mennillo, YJ Kim, I Rusu, G Lee, LC Dorman, F Bernard-Vazquez, ... BioRxiv, 2023 | 4 | 2023 |
| Optogenetic dissection of transcriptional repression in a multicellular organism J Zhao, NC Lammers, S Alamos, YJ Kim, G Martini, HG Garcia BioRxiv, 2022.11. 20.517211, 2022 | 3 | 2022 |
| Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis E Mennillo, YJ Kim, G Lee, I Rusu, RK Patel, LC Dorman, E Flynn, S Li, ... Nature Communications 15 (1), 1493, 2024 | 2 | 2024 |
| Tutorial: guidelines for manual cell type annotation of single-cell multi-omics datasets using interactive software YJ Kim, A Tarashansky, K Liang, M Urisko, L Dorman, M Borja, N Neff, ... bioRxiv, 2023.07. 11.548639, 2023 | 1 | 2023 |
| Single-nucleus RNA sequencing provides insights into the GL261-GSC syngeneic mouse model of glioblastoma L Garcia-Vicente, M Borja, V Tran, A Alvarez-Vazquez, ... bioRxiv, 2023.10. 26.564166, 2023 | | 2023 |
