Ilya Shmulevich
Ilya Shmulevich
Verified email at systemsbiology.org - Homepage
TitleCited byYear
Comprehensive molecular characterization of human colon and rectal cancer
Cancer Genome Atlas Network
Nature 487 (7407), 330, 2012
36602012
The cancer genome atlas pan-cancer analysis project
JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ...
Nature genetics 45 (10), 1113, 2013
23262013
The somatic genomic landscape of glioblastoma
CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ...
Cell 155 (2), 462-477, 2013
21632013
Comprehensive molecular characterization of gastric adenocarcinoma
Cancer Genome Atlas Research Network
Nature 513 (7517), 202, 2014
19252014
Integrated genomic characterization of endometrial carcinoma
DA Levine, Cancer Genome Atlas Research Network
Nature 497 (7447), 67, 2013
19182013
Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks
I Shmulevich, ER Dougherty, S Kim, W Zhang
Bioinformatics 18 (2), 261-274, 2002
15482002
Integrated genomic characterization of papillary thyroid carcinoma
N Agrawal, R Akbani, BA Aksoy, A Ally, H Arachchi, SL Asa, JT Auman, ...
Cell 159 (3), 676-690, 2014
9722014
Genomic classification of cutaneous melanoma
R Akbani, KC Akdemir, BA Aksoy, M Albert, A Ally, SB Amin, H Arachchi, ...
Cell 161 (7), 1681-1696, 2015
9262015
The molecular taxonomy of primary prostate cancer
A Abeshouse, J Ahn, R Akbani, A Ally, S Amin, CD Andry, M Annala, ...
Cell 163 (4), 1011-1025, 2015
8562015
From Boolean to probabilistic Boolean networks as models of genetic regulatory networks
I Shmulevich, ER Dougherty, W Zhang
Proceedings of the IEEE 90 (11), 1778-1792, 2002
5332002
Association of BRCA1 and BRCA2 mutations with survival, chemotherapy sensitivity, and gene mutator phenotype in patients with ovarian cancer
D Yang, S Khan, Y Sun, K Hess, I Shmulevich, AK Sood, W Zhang
Jama 306 (14), 1557-1565, 2011
3732011
Comprehensive and integrative genomic characterization of hepatocellular carcinoma
A Ally, M Balasundaram, R Carlsen, E Chuah, A Clarke, N Dhalla, RA Holt, ...
Cell 169 (7), 1327-1341. e23, 2017
3352017
Gene perturbation and intervention in probabilistic Boolean networks
I Shmulevich, ER Dougherty, W Zhang
Bioinformatics 18 (10), 1319-1331, 2002
3192002
Integrated analyses identify a master microRNA regulatory network for the mesenchymal subtype in serous ovarian cancer
D Yang, Y Sun, L Hu, H Zheng, P Ji, CV Pecot, Y Zhao, S Reynolds, ...
Cancer cell 23 (2), 186-199, 2013
2972013
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
2852018
Function of C/EBPδ in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals
V Litvak, SA Ramsey, AG Rust, DE Zak, KA Kennedy, AE Lampano, ...
Nature immunology 10 (4), 437, 2009
2702009
Activities and sensitivities in Boolean network models
I Shmulevich, SA Kauffman
Physical review letters 93 (4), 048701, 2004
2622004
Comprehensive characterization of cancer driver genes and mutations
MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ...
Cell 173 (2), 371-385. e18, 2018
2572018
On learning gene regulatory networks under the Boolean network model
H Lähdesmäki, I Shmulevich, O Yli-Harja
Machine learning 52 (1-2), 147-167, 2003
2512003
Binary analysis and optimization-based normalization of gene expression data
I Shmulevich, W Zhang
Bioinformatics 18 (4), 555-565, 2002
2462002
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Articles 1–20