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Cankut Çubuk, PhD
Cankut Çubuk, PhD
Senior Bioinformatician
Verified email at qmul.ac.uk - Homepage
Title
Cited by
Cited by
Year
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature Communicationsvolume 10 (1), 2674, 2019
2702019
The effects of death and post-mortem cold ischemia on human tissue transcriptomes
PG Ferreira, M Muñoz-Aguirre, F Reverter, CP Sa Godinho, A Sousa, ...
Nature communications 9 (1), 490, 2018
2522018
Babelomics 5.0: functional interpretation for new generations of genomic data
R Alonso, F Salavert, F Garcia-Garcia, J Carbonell-Caballero, M Bleda, ...
Nucleic acids research 43 (W1), W117-W121, 2015
1362015
Rituximab versus tocilizumab in rheumatoid arthritis: synovial biopsy-based biomarker analysis of the phase 4 R4RA randomized trial
F Rivellese, AEA Surace, K Goldmann, E Sciacca, C Çubuk, G Giorli, ...
Nature medicine 28 (6), 1256-1268, 2022
1122022
Stress-induced activation of brown adipose tissue prevents obesity in conditions of low adaptive thermogenesis
M Razzoli, A Frontini, A Gurney, E Mondini, C Cubuk, LS Katz, C Cero, ...
Molecular metabolism 5 (1), 19-33, 2016
982016
High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes
MR Hidalgo, C Cubuk, A Amadoz, F Salavert, J Carbonell-Caballero, ...
Oncotarget 8 (3), 5160, 2017
872017
Accelerated phosphatidylcholine turnover in macrophages promotes adipose tissue inflammation in obesity
K Petkevicius, S Virtue, G Bidault, B Jenkins, C Çubuk, C Morgantini, ...
elife 8, e47990, 2019
562019
A comparison of mechanistic signaling pathway activity analysis methods
A Amadoz, MR Hidalgo, C Cubuk, J Carbonell-Caballero, J Dopazo
Briefings in bioinformatics 20 (5), 1655-1668, 2019
482019
Gene expression integration into pathway modules reveals a pan-cancer metabolic landscape
C Cubuk, MR Hidalgo, A Amadoz, MA Pujana, F Mateo, C Herranz, ...
Cancer research 78 (21), 6059-6072, 2018
482018
Clinical likelihood ratios and balanced accuracy for 44 in silico tools against multiple large-scale functional assays of cancer susceptibility genes
C Cubuk, A Garrett, S Choi, L King, C Loveday, B Torr, GJ Burghel, ...
Genetics in Medicine 23 (11), 2096-2104, 2021
432021
Combining evidence for and against pathogenicity for variants in cancer susceptibility genes: CanVIG-UK consensus recommendations
A Garrett, M Durkie, A Callaway, GJ Burghel, R Robinson, J Drummond, ...
Journal of medical genetics, 2020
362020
Taxonomic variations in the gut microbiome of gout patients with and without tophi might have a functional impact on urate metabolism
EO Méndez-Salazar, J Vázquez-Mellado, CS Casimiro-Soriguer, ...
Molecular Medicine 27, 1-13, 2021
352021
Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome
MR Hidalgo, A Amadoz, C Çubuk, J Carbonell-Caballero, J Dopazo
Biology direct 13 (1), 1-12, 2018
352018
Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models
C Cubuk, MR Hidalgo, A Amadoz, K Rian, F Salavert, MA Pujana, ...
npj Systems Biology and Applications 5 (1), 2019
342019
Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models
F Salavert, MR Hidago, A Amadoz, C Cubuk, I Medina, D Crespo, ...
Nucleic acids research 44 (W1), W212-W216, 2016
332016
Role of synovial fibroblast subsets across synovial pathotypes in rheumatoid arthritis: a deconvolution analysis
R Micheroli, M Elhai, S Edalat, M Frank-Bertoncelj, K Bürki, A Ciurea, ...
RMD Open 8 (doi:10.1136/rmdopen-2021-001949), 2022
322022
Cancer Variant Interpretation Group UK (CanVIG-UK): an exemplar national subspecialty multidisciplinary network
A Garrett, A Callaway, M Durkie, C Cubuk, M Alikian, GJ Burghel, ...
Journal of Medical Genetics, 2020
322020
Tissue expression of MLH1, PMS2, MSH2, and MSH6 proteins and prognostic value of microsatellite instability in Wilms tumor: experience of 45 cases
G Diniz, S Aktas, C Cubuk, R Ortac, C Vergin, N Olgun
Pediatric hematology and oncology 30 (4), 273-284, 2013
282013
Mechanistic modeling of the SARS-CoV-2 disease map
K Rian, M Esteban-Medina, MR Hidalgo, C Çubuk, MM Falco, C Loucera, ...
BioData mining 14, 1-8, 2021
222021
Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics
M Yang, F Petralia, Z Li, H Li, W Ma, X Song, S Kim, H Lee, H Yu, B Lee, ...
Cell Systems 11 (2), 186-195. e9, 2020
202020
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