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Katrina Kalantar
Katrina Kalantar
Chan Zuckerberg Initiative
Verified email at berkeley.edu
Title
Cited by
Cited by
Year
Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults
C Langelier, KL Kalantar, F Moazed, MR Wilson, ED Crawford, T Deiss, ...
Proceedings of the National Academy of Sciences 115 (52), E12353-E12362, 2018
3202018
IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
KL Kalantar, T Carvalho, CFA de Bourcy, B Dimitrov, G Dingle, R Egger, ...
Gigascience 9 (10), giaa111, 2020
2012020
Metagenomic sequencing detects respiratory pathogens in hematopoietic cellular transplant patients
C Langelier, MS Zinter, K Kalantar, GA Yanik, S Christenson, ...
American journal of respiratory and critical care medicine 197 (4), 524-528, 2018
1862018
Pulmonary metagenomic sequencing suggests missed infections in immunocompromised children
MS Zinter, CC Dvorak, MY Mayday, K Iwanaga, NP Ly, ME McGarry, ...
Clinical Infectious Diseases 68 (11), 1847-1855, 2019
1352019
Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda
A Ramesh, S Nakielny, J Hsu, M Kyohere, O Byaruhanga, C de Bourcy, ...
PloS one 14 (6), e0218318, 2019
822019
Unbiased metagenomic sequencing for pediatric meningitis in Bangladesh reveals neuroinvasive chikungunya virus outbreak and other unrealized pathogens
S Saha, A Ramesh, K Kalantar, R Malaker, M Hasanuzzaman, LM Khan, ...
MBio 10 (6), 10.1128/mbio. 02877-19, 2019
682019
Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults
KL Kalantar, L Neyton, M Abdelghany, E Mick, A Jauregui, S Caldera, ...
Nature microbiology 7 (11), 1805-1816, 2022
492022
Co-occurrence of Campylobacter Species in Children From Eastern Ethiopia, and Their Association With Environmental Enteric Dysfunction, Diarrhea, and Host …
Y Terefe, L Deblais, M Ghanem, YA Helmy, B Mummed, D Chen, N Singh, ...
Frontiers in public health 8, 99, 2020
452020
Metagenomic comparison of tracheal aspirate and mini-bronchial alveolar lavage for assessment of respiratory microbiota
KL Kalantar, F Moazed, SC Christenson, J Wilson, T Deiss, A Belzer, ...
American Journal of Physiology-Lung Cellular and Molecular Physiology 316 (3 …, 2019
412019
Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections
PH Serpa, X Deng, M Abdelghany, E Crawford, K Malcolm, S Caldera, ...
Genome medicine 14 (1), 74, 2022
332022
Microbiome and antimicrobial resistance gene dynamics in international travelers
C Langelier, M Graves, K Kalantar, S Caldera, R Durrant, M Fisher, ...
Emerging infectious diseases 25 (7), 1380, 2019
332019
Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics
A Tsitsiklis, CM Osborne, J Kamm, K Williamson, K Kalantar, G Dudas, ...
The Lancet Microbe 3 (4), e284-e293, 2022
322022
Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system
JA Bohl, S Lay, S Chea, V Ahyong, DM Parker, S Gallagher, J Fintzi, ...
Proceedings of the National Academy of Sciences 119 (11), e2115285119, 2022
312022
Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia
JE Manning, JA Bohl, S Lay, S Chea, L Sovann, Y Sengdoeurn, S Heng, ...
BioRxiv, 2020
262020
Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children
E Mick, A Tsitsiklis, J Kamm, KL Kalantar, S Caldera, A Lyden, M Tan, ...
Journal of Clinical Investigation 133 (7), e165904, 2023
142023
Etiology of fever in Ugandan children: identification of microbial pathogens using metagenomic next-generation sequencing and IDseq, a platform for unbiased metagenomic analysis
A Ramesh, S Nakielny, J Hsu, M Kyohere, O Byaruhanga, C Bourcy, ...
Biorxiv, 385005, 2018
102018
Hyperinflammatory ARDS is characterized by interferon-stimulated gene expression, T-cell activation, and an altered metatranscriptome in tracheal aspirates
A Sarma, SA Christenson, BS Zha, A Oliveira, LPA Neyton, E Mick, ...
medRxiv, 2022
92022
Pneumonia surveillance with culture-independent metatranscriptomics in HIV-positive adults in Uganda: a cross-sectional study
N Spottiswoode, JD Bloomstein, S Caldera, A Sessolo, K McCauley, ...
The Lancet Microbe 3 (5), e357-e365, 2022
82022
Extracorporeal life support survival in a pediatric hematopoietic cellular transplant recipient with presumed GvHD-related fulminant myocarditis
MS Zinter, BD Barrows, PC Ursell, K Kowalek, K Kalantar, N Cambronero, ...
Bone marrow transplantation 52 (9), 1330-1333, 2017
82017
Functional transcriptomic studies of immune responses and endotoxin tolerance in early human sepsis
A Leligdowicz, J Kamm, K Kalantar, A Jauregui, K Vessel, S Caldera, ...
Shock 57 (6), 180-190, 2022
72022
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