Katrina Kalantar
Katrina Kalantar
Chan Zuckerberg Initiative
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Cited by
Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults
C Langelier, KL Kalantar, F Moazed, MR Wilson, ED Crawford, T Deiss, ...
Proceedings of the National Academy of Sciences 115 (52), E12353-E12362, 2018
IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
KL Kalantar, T Carvalho, CFA de Bourcy, B Dimitrov, G Dingle, R Egger, ...
Gigascience 9 (10), giaa111, 2020
Metagenomic sequencing detects respiratory pathogens in hematopoietic cellular transplant patients
C Langelier, MS Zinter, K Kalantar, GA Yanik, S Christenson, ...
American journal of respiratory and critical care medicine 197 (4), 524-528, 2018
Pulmonary metagenomic sequencing suggests missed infections in immunocompromised children
MS Zinter, CC Dvorak, MY Mayday, K Iwanaga, NP Ly, ME McGarry, ...
Clinical Infectious Diseases 68 (11), 1847-1855, 2019
Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda
A Ramesh, S Nakielny, J Hsu, M Kyohere, O Byaruhanga, C de Bourcy, ...
PloS one 14 (6), e0218318, 2019
Unbiased metagenomic sequencing for pediatric meningitis in Bangladesh reveals neuroinvasive chikungunya virus outbreak and other unrealized pathogens
S Saha, A Ramesh, K Kalantar, R Malaker, M Hasanuzzaman, LM Khan, ...
MBio 10 (6), 10.1128/mbio. 02877-19, 2019
Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults
KL Kalantar, L Neyton, M Abdelghany, E Mick, A Jauregui, S Caldera, ...
Nature microbiology 7 (11), 1805-1816, 2022
Co-occurrence of Campylobacter Species in Children From Eastern Ethiopia, and Their Association With Environmental Enteric Dysfunction, Diarrhea, and Host …
Y Terefe, L Deblais, M Ghanem, YA Helmy, B Mummed, D Chen, N Singh, ...
Frontiers in public health 8, 99, 2020
Metagenomic comparison of tracheal aspirate and mini-bronchial alveolar lavage for assessment of respiratory microbiota
KL Kalantar, F Moazed, SC Christenson, J Wilson, T Deiss, A Belzer, ...
American Journal of Physiology-Lung Cellular and Molecular Physiology 316 (3 …, 2019
Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections
PH Serpa, X Deng, M Abdelghany, E Crawford, K Malcolm, S Caldera, ...
Genome medicine 14 (1), 74, 2022
Microbiome and antimicrobial resistance gene dynamics in international travelers
C Langelier, M Graves, K Kalantar, S Caldera, R Durrant, M Fisher, ...
Emerging infectious diseases 25 (7), 1380, 2019
Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics
A Tsitsiklis, CM Osborne, J Kamm, K Williamson, K Kalantar, G Dudas, ...
The Lancet Microbe 3 (4), e284-e293, 2022
Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system
JA Bohl, S Lay, S Chea, V Ahyong, DM Parker, S Gallagher, J Fintzi, ...
Proceedings of the National Academy of Sciences 119 (11), e2115285119, 2022
Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia
JE Manning, JA Bohl, S Lay, S Chea, L Sovann, Y Sengdoeurn, S Heng, ...
BioRxiv, 2020
Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children
E Mick, A Tsitsiklis, J Kamm, KL Kalantar, S Caldera, A Lyden, M Tan, ...
Journal of Clinical Investigation 133 (7), e165904, 2023
Etiology of fever in Ugandan children: identification of microbial pathogens using metagenomic next-generation sequencing and IDseq, a platform for unbiased metagenomic analysis
A Ramesh, S Nakielny, J Hsu, M Kyohere, O Byaruhanga, C Bourcy, ...
Biorxiv, 385005, 2018
Hyperinflammatory ARDS is characterized by interferon-stimulated gene expression, T-cell activation, and an altered metatranscriptome in tracheal aspirates
A Sarma, SA Christenson, BS Zha, A Oliveira, LPA Neyton, E Mick, ...
medRxiv, 2022
Pneumonia surveillance with culture-independent metatranscriptomics in HIV-positive adults in Uganda: a cross-sectional study
N Spottiswoode, JD Bloomstein, S Caldera, A Sessolo, K McCauley, ...
The Lancet Microbe 3 (5), e357-e365, 2022
Extracorporeal life support survival in a pediatric hematopoietic cellular transplant recipient with presumed GvHD-related fulminant myocarditis
MS Zinter, BD Barrows, PC Ursell, K Kowalek, K Kalantar, N Cambronero, ...
Bone marrow transplantation 52 (9), 1330-1333, 2017
Functional transcriptomic studies of immune responses and endotoxin tolerance in early human sepsis
A Leligdowicz, J Kamm, K Kalantar, A Jauregui, K Vessel, S Caldera, ...
Shock 57 (6), 180-190, 2022
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