| Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature protocols 12 (6), 1261-1276, 2017 | 1032 | 2017 |
| Establishment and cryptic transmission of Zika virus in Brazil and the Americas NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ... Nature 546 (7658), 406-410, 2017 | 625 | 2017 |
| Developmental regulation of Th17‐cell capacity in human neonates A Black, S Bhaumik, RL Kirkman, CT Weaver, DA Randolph European journal of immunology 42 (2), 311-319, 2012 | 94 | 2012 |
| Ebola virus transmission initiated by relapse of systemic Ebola virus disease P Mbala-Kingebeni, C Pratt, M Mutafali-Ruffin, MG Pauthner, F Bile, ... New England Journal of Medicine 384 (13), 1240-1247, 2021 | 78 | 2021 |
| Ten recommendations for supporting open pathogen genomic analysis in public health A Black, DR MacCannell, TR Sibley, T Bedford Nature medicine 26 (6), 832-841, 2020 | 75 | 2020 |
| Integration of genomic sequencing into the response to the Ebola virus outbreak in Nord Kivu, Democratic Republic of the Congo E Kinganda-Lusamaki, A Black, DB Mukadi, J Hadfield, ... Nature medicine 27 (4), 710-716, 2021 | 37 | 2021 |
| dms-view: Interactive visualization tool for deep mutational scanning data SK Hilton, J Huddleston, A Black, K North, AS Dingens, T Bedford, ... Journal of open source software 5 (52), 2020 | 34 | 2020 |
| Massive iatrogenic outbreak of human immunodeficiency virus type 1 in rural Cambodia, 2014–2015 F Rouet, J Nouhin, DP Zheng, B Roche, A Black, S Prak, M Leoz, ... Clinical Infectious Diseases 66 (11), 1733-1741, 2018 | 26 | 2018 |
| Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia A Black, LH Moncla, K Laiton-Donato, B Potter, L Pardo, A Rico, C Tovar, ... BMC infectious diseases 19, 1-11, 2019 | 24 | 2019 |
| Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ... Gigascience 11, giac003, 2022 | 22 | 2022 |
| Geography and host species shape the evolutionary dynamics of U genogroup infectious hematopoietic necrosis virus A Black, R Breyta, T Bedford, G Kurath Virus Evolution 2 (2), vew034, 2016 | 20 | 2016 |
| Successful mitigation of viral disease based on a delayed exposure rearing strategy at a large-scale steelhead trout conservation hatchery R Breyta, C Samson, M Blair, A Black, G Kurath Aquaculture 450, 213-224, 2016 | 15 | 2016 |
| Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State LH Moncla, A Black, C DeBolt, M Lang, NR Graff, AC Pérez-Osorio, ... Elife 10, e66448, 2021 | 14 | 2021 |
| The PHA4GE SARS-CoV-2 contextual data specification for open genomic epidemiology EJ Griffiths, RE Timme, AJ Page, N Alikhan, D Fornika, F Maguire, ... | 14 | 2020 |
| Spatial and temporal heterogeneity of infectious hematopoietic necrosis virus in Pacific Northwest salmonids R Breyta, A Black, J Kaufman, G Kurath Infection, Genetics and Evolution 45, 347-358, 2016 | 12 | 2016 |
| Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California G Stoddard, A Black, P Ayscue, D Lu, J Kamm, K Bhatt, L Chan, AL Kistler, ... BMC Public Health 22 (1), 456, 2022 | 9 | 2022 |
| Trends in maternal outcomes during the COVID-19 pandemic in Alabama from 2016 to 2021 VV Shukla, AKMF Rahman, X Shen, A Black, A Nakhmani, ... JAMA Network Open 5 (4), e222681-e222681, 2022 | 6 | 2022 |
| Metagenomic next-generation sequencing to characterize potential etiologies of non-malarial fever in a cohort living in a high malaria burden area of Uganda L Mwakibete, S Takahashi, V Ahyong, A Black, J Rek, I Ssewanyana, ... PLOS Global Public Health 3 (5), e0001675, 2023 | 5 | 2023 |
| Infection clusters can elevate risk of diagnostic target failure for detection of SARS-CoV-2 D Lopez, J Roberts, M Bourgeois, J Kootstra, S Minnick, A Black, J Mauss, ... PLoS One 17 (2), e0264008, 2022 | 5 | 2022 |
| Genetic characterization of the Zika virus epidemic in the US Virgin Islands A Black, B Potter, G Dudas, L Feldstein, ND Grubaugh, KG Andersen, ... bioRxiv, 113100, 2017 | 5 | 2017 |
