| A natural killer–dendritic cell axis defines checkpoint therapy–responsive tumor microenvironments KC Barry, J Hsu, ML Broz, FJ Cueto, M Binnewies, AJ Combes, ... Nature medicine 24 (8), 1178-1191, 2018 | 798 | 2018 |
| SCENITH: a flow cytometry-based method to functionally profile energy metabolism with single-cell resolution RJ Argüello, AJ Combes, R Char, JP Gigan, AI Baaziz, E Bousiquot, ... Cell metabolism 32 (6), 1063-1075. e7, 2020 | 227 | 2020 |
| Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 MGP van der Wijst, SE Vazquez, GC Hartoularos, P Bastard, T Grant, ... Science translational medicine 13 (612), eabh2624, 2021 | 171 | 2021 |
| Spatiotemporal co-dependency between macrophages and exhausted CD8+ T cells in cancer K Kersten, KH Hu, AJ Combes, B Samad, T Harwin, A Ray, AA Rao, E Cai, ... Cancer Cell 40 (6), 624-638. e9, 2022 | 129 | 2022 |
| Berkeley PHOG: PhyloFacts orthology group prediction web server RS Datta, C Meacham, B Samad, C Neyer, K Sjölander Nucleic acids research 37 (suppl_2), W84-W89, 2009 | 94 | 2009 |
| Dynamic CD8+ T cell responses to cancer immunotherapy in human regional lymph nodes are disrupted in metastatic lymph nodes MK Rahim, TLH Okholm, KB Jones, EE McCarthy, CC Liu, JL Yee, ... Cell 186 (6), 1127-1143. e18, 2023 | 90 | 2023 |
| Discovering dominant tumor immune archetypes in a pan-cancer census AJ Combes, B Samad, J Tsui, NW Chew, P Yan, GC Reeder, D Kushnoor, ... Cell 185 (1), 184-203. e19, 2022 | 75 | 2022 |
| The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification C Afrasiabi, B Samad, D Dineen, C Meacham, K Sjölander Nucleic Acids Research 41 (W1), W242-W248, 2013 | 38 | 2013 |
| Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: results from the IMPACC study A Ozonoff, J Schaenman, ND Jayavelu, CE Milliren, CS Calfee, CB Cairns, ... EBioMedicine 83, 2022 | 32 | 2022 |
| SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction R Hagopian, JR Davidson, RS Datta, B Samad, GR Jarvis, K Sjï¿ ½lander Nucleic acids research 38 (suppl_2), W29-W34, 2010 | 30 | 2010 |
| Active surveillance characterizes human intratumoral T cell exhaustion R You, J Artichoker, A Fries, AW Edwards, AJ Combes, GC Reeder, ... The Journal of clinical investigation 131 (18), 2021 | 28 | 2021 |
| Holistic characterization of tumor monocyte-to-macrophage differentiation integrates distinct immune phenotypes in kidney cancer AM Mujal, AJ Combes, AA Rao, M Binnewies, B Samad, J Tsui, ... Cancer immunology research 10 (4), 403-419, 2022 | 23 | 2022 |
| Mass cytometry reveals a conserved immune trajectory of recovery in hospitalized COVID-19 patients CE Burnett, TLH Okholm, I Tenvooren, DM Marquez, S Tamaki, ... Immunity 55 (7), 1284-1298. e3, 2022 | 14 | 2022 |
| Defining and using immune archetypes to classify and treat cancer AJ Combes, B Samad, MF Krummel Nature Reviews Cancer 23 (7), 491-505, 2023 | 11 | 2023 |
| Transcriptional space-time mapping identifies concerted immune and stromal cell patterns and gene programs in wound healing and cancer KH Hu, NF Kuhn, T Courau, J Tsui, B Samad, P Ha, JR Kratz, AJ Combes, ... Cell stem cell 30 (6), 885-903. e10, 2023 | 4 | 2023 |
| Myeloid mechano-metabolic programming restricts anti-tumor immunity KM Tharp, K Kersten, OM Maller, GA Timblin, C Stashko, FP Canale, ... bioRxiv, 2022.07. 14.499764, 2022 | 4 | 2022 |
| Critical role of CD206+ macrophages in organizing anti-tumor immunity A Ray, KH Hu, K Kersten, NF Kuhn, B Samad, AJ Combes, MF Krummel bioRxiv, 2023 | 3 | 2023 |
| Cyclone: an accessible pipeline to analyze, evaluate, and optimize multiparametric cytometry data RK Patel, RG Jaszczak, K Im, ND Carey, T Courau, DG Bunis, B Samad, ... Frontiers in Immunology 14, 1167241, 2023 | 3 | 2023 |
| A pan-cancer census of dominant tumor immune archetypes AJ Combes, B Samad, J Tsui, NW Chew, P Yan, GC Reeder, D Kushnoor, ... Biorxiv, 2021.04. 26.441344, 2021 | 3 | 2021 |
| Tumor cell heterogeneity drives spatial organization of the intratumoral immune response in squamous cell skin carcinoma M Tanaka, L Lum, K Hu, C Ledezma-Soto, B Samad, D Superville, K Ng, ... bioRxiv, 2023 | 2 | 2023 |
