Mateusz Kurcinski
Mateusz Kurcinski
Підтверджена електронна адреса в chem.uw.edu.pl - Домашня сторінка
Назва
Посилання
Посилання
Рік
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site
M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik
Nucleic acids research 43 (W1), W419-W424, 2015
2522015
Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking
M Blaszczyk, M Kurcinski, M Kouza, L Wieteska, A Debinski, A Kolinski, ...
Methods 93, 72-83, 2016
1262016
Protein–peptide docking: opportunities and challenges
M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ...
Drug discovery today 23 (8), 1530-1537, 2018
1122018
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures
A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ...
Nucleic acids research 46 (W1), W338-W343, 2018
872018
Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step
K Steczkiewicz, MT Zimmermann, M Kurcinski, BA Lewis, D Dobbs, ...
Proceedings of the National Academy of Sciences 108 (23), 9443-9448, 2011
532011
Mechanism of folding and binding of an intrinsically disordered protein as revealed by ab initio simulations
M Kurcinski, A Kolinski, S Kmiecik
Journal of Chemical Theory and Computation 10 (6), 2224-2231, 2014
402014
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility
M Kurcinski, T Oleniecki, MP Ciemny, A Kuriata, A Kolinski, S Kmiecik
Bioinformatics 35 (4), 694-695, 2019
392019
Highly flexible protein-peptide docking using CABS-dock
MP Ciemny, M Kurcinski, KJ Kozak, A Kolinski, S Kmiecik
Modeling Peptide-Protein Interactions, 69-94, 2017
352017
Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction
MP Ciemny, A Debinski, M Paczkowska, A Kolinski, M Kurcinski, ...
Scientific reports 6 (1), 1-8, 2016
352016
Denatured proteins and early folding intermediates simulated in a reduced conformational space.
S Kmiecik, M Kurcinski, A Rutkowska, D Gront, A Kolinski
Acta Biochimica Polonica 53 (1), 131-143, 2006
292006
Steps towards flexible docking: modeling of three-dimensional structures of the nuclear receptors bound with peptide ligands mimicking co-activators’ sequences
M Kurcinski, A Kolinski
The Journal of steroid biochemistry and molecular biology 103 (3-5), 357-360, 2007
272007
Hierarchical modeling of protein interactions
M Kurcinski, A Kolinski
Journal of molecular modeling 13 (6), 691-698, 2007
252007
Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility
A Kuriata, V Iglesias, J Pujols, M Kurcinski, S Kmiecik, S Ventura
Nucleic acids research 47 (W1), W300-W307, 2019
232019
CABS-dock standalone: a toolbox for flexible protein–peptide docking
M Kurcinski, M Pawel Ciemny, T Oleniecki, A Kuriata, ...
Bioinformatics 35 (20), 4170-4172, 2019
212019
Analysis and optimization of interactions between peptides mimicking the GD2 ganglioside and the monoclonal antibody 14G2a
I HORWAcIK, M Kurciński, M Bzowska, AK KOWALcZYK, D Czaplicki, ...
International journal of molecular medicine 28 (1), 47-57, 2011
172011
Flexible docking of peptides to proteins using CABS‐dock
M Kurcinski, A Badaczewska‐Dawid, M Kolinski, A Kolinski, S Kmiecik
Protein Science 29 (1), 211-222, 2020
162020
Theoretical study of molecular mechanism of binding TRAP220 coactivator to Retinoid X Receptor alpha, activated by 9-cis retinoic acid
M Kurcinski, A Kolinski
The Journal of steroid biochemistry and molecular biology 121 (1-2), 124-129, 2010
132010
Protein–peptide docking using CABS-dock and contact information
M Blaszczyk, MP Ciemny, A Kolinski, M Kurcinski, S Kmiecik
Briefings in bioinformatics 20 (6), 2299-2305, 2019
122019
Coarse-Grained Modeling of Peptide Docking Associated with Large Conformation Transitions of the Binding Protein: Troponin I Fragment–Troponin C System
J Wabik, M Kurcinski, A Kolinski
Molecules 20 (6), 10763-10780, 2015
122015
Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motif
MP Ciemny, M Kurcinski, M Blaszczyk, A Kolinski, S Kmiecik
Biomedical engineering online 16 (1), 1-9, 2017
112017
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