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Anna Kreshuk
Anna Kreshuk
Group Leader, EMBL Heidelberg
Verified email at embl.de
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Cited by
Cited by
Year
ROOT—A C++ framework for petabyte data storage, statistical analysis and visualization
I Antcheva, M Ballintijn, B Bellenot, M Biskup, R Brun, N Buncic, P Canal, ...
Computer Physics Communications 180 (12), 2499-2512, 2009
8382009
Ilastik: interactive machine learning for (bio) image analysis
S Berg, D Kutra, T Kroeger, CN Straehle, BX Kausler, C Haubold, ...
Nature Methods 16 (12), 1226-1232, 2019
7162019
ROOT—A C++ framework for petabyte data storage, statistical analysis and visualization
I Antcheva, M Ballintijn, B Bellenot, M Biskup, R Brun, N Buncic, P Canal, ...
Computer Physics Communications 182 (6), 1384-1385, 2011
2022011
Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images
A Kreshuk, CN Straehle, C Sommer, U Koethe, M Cantoni, G Knott, ...
PloS one 6 (10), e24899, 2011
1472011
Multicut brings automated neurite segmentation closer to human performance
T Beier, C Pape, N Rahaman, T Prange, S Berg, DD Bock, A Cardona, ...
Nature Methods 14 (2), 2017
1212017
Three‐dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues
C Calì, J Baghabra, DJ Boges, GR Holst, A Kreshuk, FA Hamprecht, ...
Journal of Comparative Neurology 524 (1), 23-38, 2016
922016
Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons
B Maco, A Holtmaat, M Cantoni, A Kreshuk, CN Straehle, FA Hamprecht, ...
PloS one 8 (2), e57405, 2013
812013
Accurate and versatile 3D segmentation of plant tissues at cellular resolution
A Wolny, L Cerrone, A Vijayan, R Tofanelli, AV Barro, M Louveaux, ...
Elife 9, e57613, 2020
802020
Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks
A Kreshuk, U Koethe, E Pax, DD Bock, FA Hamprecht
PLoS ONE, e87351, 2014
652014
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution
JM Musser, KJ Schippers, M Nickel, G Mizzon, AB Kohn, C Pape, ...
Science 374 (6568), 717-723, 2021
572021
Semiautomated correlative 3D electron microscopy of in vivo–imaged axons and dendrites
B Maco, M Cantoni, A Holtmaat, A Kreshuk, FA Hamprecht, GW Knott
Nature protocols 9 (6), 1354-1366, 2014
442014
Segmenting and Tracking Multiple Dividing Targets Using ilastik
C Haubold, M Schiegg, A Kreshuk, S Berg, U Koethe, FA Hamprecht
Focus on Bio-Image Informatics, 199-229, 2016
412016
Deep learning enables fast and dense single-molecule localization with high accuracy
A Speiser, LR Müller, P Hoess, U Matti, CJ Obara, WR Legant, A Kreshuk, ...
Nature methods 18 (9), 1082-1090, 2021
402021
The Mutex Watershed: Efficient, Parameter-Free Image Partitioning
S Wolf, C Pape, A Bailoni, N Rahaman, A Kreshuk, U Köthe, ...
Proceedings of the European Conference on Computer Vision (ECCV), 546-562, 2018
402018
Whole-body integration of gene expression and single-cell morphology
HM Vergara, C Pape, KI Meechan, V Zinchenko, C Genoud, AA Wanner, ...
Cell 184 (18), 4819-4837. e22, 2021
362021
Automated segmentation of synapses in 3D EM data
A Kreshuk, CN Straehle, C Sommer, U Koethe, G Knott, FA Hamprecht
Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on …, 2011
352011
The mutex watershed and its objective: Efficient, parameter-free graph partitioning
S Wolf, A Bailoni, C Pape, N Rahaman, A Kreshuk, U Köthe, ...
IEEE transactions on pattern analysis and machine intelligence 43 (10), 3724 …, 2020
282020
The mutex watershed and its objective: Efficient, parameter-free graph partitioning
S Wolf, A Bailoni, C Pape, N Rahaman, A Kreshuk, U Köthe, ...
IEEE transactions on pattern analysis and machine intelligence 43 (10), 3724 …, 2020
282020
Deep learning-enhanced light-field imaging with continuous validation
N Wagner, F Beuttenmueller, N Norlin, J Gierten, JC Boffi, J Wittbrodt, ...
Nature Methods 18 (5), 557-563, 2021
262021
Neuron segmentation with high-level biological priors
NE Krasowski, T Beier, GW Knott, U Köthe, FA Hamprecht, A Kreshuk
IEEE transactions on medical imaging 37 (4), 829-839, 2018
262018
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